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Plot line of sight diagnostics¶
This example shows how to compute line of sight dust surface densities, and plots some diagnostics.
(<Figure size 350x500 with 1 Axes>, <Axes: xlabel='$\\lambda/[\\mathrm{\\AA}]$', ylabel='$L_{\\nu}/[\\mathrm{\\rm{erg} \\ / \\ \\rm{Hz \\cdot \\rm{s}}}]$'>)
import time
import matplotlib.pyplot as plt
import numpy as np
from scipy.spatial import cKDTree
from unyt import Mpc, Msun, Myr
from synthesizer.emission_models import TotalEmission
from synthesizer.emission_models.attenuation import PowerLaw
from synthesizer.grid import Grid
from synthesizer.kernel_functions import Kernel
from synthesizer.parametric import SFH, ZDist
from synthesizer.parametric import Stars as ParametricStars
from synthesizer.particle.galaxy import Galaxy
from synthesizer.particle.gas import Gas
from synthesizer.particle.particles import CoordinateGenerator
from synthesizer.particle.stars import sample_sfzh
plt.rcParams["font.family"] = "DeJavu Serif"
plt.rcParams["font.serif"] = ["Times New Roman"]
def calculate_smoothing_lengths(positions, num_neighbors=56):
"""Calculate the SPH smoothing lengths for a set of coordinates."""
tree = cKDTree(positions)
distances, _ = tree.query(positions, k=num_neighbors + 1)
# The k-th nearest neighbor distance (k = num_neighbors)
kth_distances = distances[:, num_neighbors]
# Set the smoothing length to the k-th nearest neighbor
# distance divided by 2.0
smoothing_lengths = kth_distances / 2.0
return smoothing_lengths
# Set the seed
np.random.seed(42)
start = time.time()
# Get the location of this script, __file__ is the absolute path of this
# script, however we just want to directory
# script_path = os.path.abspath(os.path.dirname(__file__))
# Define the grid
grid_name = "test_grid"
grid_dir = "../../tests/test_grid/"
grid = Grid(grid_name, grid_dir=grid_dir)
# Define the model
model = TotalEmission(
grid,
tau_v="tau_v",
dust_curve=PowerLaw(slope=-1),
fesc=0.1,
per_particle=True,
)
# Define the grid (normally this would be defined by an SPS grid)
log10ages = np.arange(6.0, 10.5, 0.1)
metallicities = 10 ** np.arange(-5.0, -1.5, 0.1)
Z_p = {"metallicity": 0.01}
metal_dist = ZDist.DeltaConstant(**Z_p)
sfh_p = {"duration": 100 * Myr}
sfh = SFH.Constant(**sfh_p) # constant star formation
# Generate the star formation metallicity history
mass = 10**10 * Msun
param_stars = ParametricStars(
log10ages,
metallicities,
sf_hist=sfh,
metal_dist=metal_dist,
initial_mass=mass,
)
# How many stars and gas particles?
nstars = 1000
ngas = 1000
# Generate some random coordinates
coords = CoordinateGenerator.generate_3D_gaussian(nstars)
# Calculate smoothing lengths
smls = calculate_smoothing_lengths(coords)
# Sample the SFZH, producing a Stars object
# we will also pass some keyword arguments for attributes
# we will need for imaging
stars = sample_sfzh(
param_stars.sfzh,
param_stars.log10ages,
param_stars.log10metallicities,
nstars,
coordinates=coords * Mpc,
current_masses=np.full(nstars, 10**8.7 / nstars) * Msun,
smoothing_lengths=smls * Mpc,
redshift=1,
)
# Now make the gas
# Generate some random coordinates
coords = CoordinateGenerator.generate_3D_gaussian(ngas)
# Calculate the smoothing lengths
smls = calculate_smoothing_lengths(coords)
gas = Gas(
masses=np.random.uniform(10**6, 10**6.5, ngas) * Msun,
metallicities=np.random.uniform(0.01, 0.05, ngas),
coordinates=coords * Mpc,
smoothing_lengths=smls * Mpc,
dust_to_metal_ratio=0.2,
)
# Create galaxy object
galaxy = Galaxy("Galaxy", stars=stars, gas=gas, redshift=1)
# Get the SPH kernel
sph_kernel = Kernel()
kernel_data = sph_kernel.get_kernel()
# Calculate the tau_vs
galaxy.get_stellar_los_tau_v(
kappa=0.07,
kernel=kernel_data,
force_loop=False,
)
# Get the spectra (this will automatically use the tau_vs we just calculated
# since the emission model has tau_v="tau_v")
galaxy.stars.get_spectra(model)
# Integrate the particle spectra
galaxy.integrate_particle_spectra()
# Plot the Sed
galaxy.plot_spectra(show=True, combined_spectra=False, stellar_spectra=True)
Total running time of the script: (0 minutes 2.104 seconds)